Basic Information
Locus ID:
gene.Posoc06g04570
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 26874157 | 26889451 | - | gene.Posoc06g04570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 33,496.56 Da | 59.16 | 71.50 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 98 | 143 | 1.58028E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 100 | 141 | 1.1E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 154 | 2.03E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 221 | 1.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 141 | 1.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 100 | 142 | 12.961374 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 115 | 124 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_010918493.1 | E3 ubiquitin-protein ligase RMA1H1 [Elaeis guineensis] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NX13 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_53G00720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology