Basic Information
Locus ID:
gene.Posoc06g04240
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 25854312 | 25865656 | + | gene.Posoc06g04240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 106,265.66 Da | 50.73 | 75.63 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 249 | 359 | 2.1E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 704 | 764 | 1.2E-5 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 385 | 9.54E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 832 | 902 | 3.14E-10 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 701 | 765 | 1.34E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 828 | 906 | 1.9E-5 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 686 | 768 | 3.2E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 398 | 8.3E-27 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 701 | 765 | 4.0E-9 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 833 | 901 | 0.011 | IPR014720 |
| SMART | SM00577 | forpap2 | 194 | 368 | 6.0E-17 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 832 | 902 | 9.707684 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 381 | 15.985076 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 700 | 766 | 12.863604 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 546 | - | - |
| Coils | Coil | Coil | 154 | 174 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010918441.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Elaeis guineensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R0I3 | protein-serine/threonine phosphatase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology