Basic Information
Locus ID:
gene.Posoc06g04200
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
pre-mRNA-processing factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 25264928 | 25265299 | + | gene.Posoc06g04200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 13,051.12 Da | 63.78 | 117.40 | 0.54 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03430.1 | pre-mRNA splicing factor-related. Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. | 0 |
| RefSeq | XP_009401680.1 | PREDICTED: protein STABILIZED1 [Musa acuminata subsp. malaccensis] | 0 |
| Q9ZT71 | Protein STABILIZED1 OS=Arabidopsis thaliana OX=3702 GN=STA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XMA8 | Pre-mRNA-processing factor 6 (Fragment) OS=Anthurium amnicola OX=1678845 GN=Prpf6_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg33482 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G306900 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04200 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.8741_chr05_- |