Basic Information
Locus ID:
gene.Posoc06g04090
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 24968734 | 24976843 | - | gene.Posoc06g04090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 88,187.79 Da | 44.02 | 85.10 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 262 | 2.6273E-68 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 53 | 88 | 4.1E-5 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 643 | 800 | 2.3E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 1.2E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 46 | 0.0022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 301 | 2.22E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 139 | 347 | 1.6E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 138 | 3.1E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 4.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 5.3E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 1.6E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 14.371031 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 18.562237 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 47 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.821944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.288313 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 4.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 4.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 4.3E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 803 | 20.783907 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 529 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010935617.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Elaeis guineensis] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8K0N6X2 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Cocos nucifera OX=13894 GN=COCNU_09G006950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology