HalophFGD

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Basic Information
Locus ID: gene.Posoc06g02880
Species & Taxonomic ID: Posidonia oceanica & 55489
Genome Assembly: GCA_037176725.1
Description: gag-polypeptide of LTR copia-type
Maps and Mapping Data
Chromosome Start End Strand ID
Chr06 10244194 10245920 - gene.Posoc06g02880
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.97 23,164.91 Da 35.83 84.74 -0.09
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Best hit
Source Best Hit ID Description E-value
RefSeq XP_033138682.1 uncharacterized protein LOC103844963 isoform X1 [Brassica rapa] 0
TrEMBL A0A438CKJ3 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3924 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Salicornia bigelovii 26 Sbi_jg16622, Sbi_jg17073, Sbi_jg19473, Sbi_jg22216 ...
Sbi_jg22891, Sbi_jg23686, Sbi_jg23825, Sbi_jg27443, Sbi_jg28868, Sbi_jg3161, Sbi_jg38181, Sbi_jg4031, Sbi_jg40593, Sbi_jg425, Sbi_jg46308, Sbi_jg46391, Sbi_jg46665, Sbi_jg50507, Sbi_jg5171, Sbi_jg52198, Sbi_jg53458, Sbi_jg57546, Sbi_jg57609, Sbi_jg57842, Sbi_jg63673, Sbi_jg7635
Amaranthaceae Salicornia europaea 3 Seu_jg16625, Seu_jg25299, Seu_jg7424
Amaranthaceae Suaeda glauca 2 Sgl03630, Sgl40731
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000000054, gene:ENSEOMG00000012600 ...
gene:ENSEOMG00000042438
Anacardiaceae Pistacia vera 2 pistato.v30279440, pistato.v30295370
Asparagaceae Asparagus officinalis 2 AsparagusV1_05.1654.V1.1, AsparagusV1_07.3416.V1.1
Asteraceae Flaveria trinervia 5 Ftri13G30324, Ftri17G32806, Ftri18G17640, Ftri2G04800 ...
Ftri5G25740
Brassicaceae Schrenkiella parvula 3 Sp1g31710.v2.2, Sp3g30840.v2.2, Sp6g11040.v2.2
Brassicaceae Brassica nigra 6 BniB03g012420.2N, BniB03g019180.2N, BniB03p000127.2N ...
BniB05g060060.2N, BniB07g021730.2N, BniB08g051100.2N
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno07g04970
Hydrocharitaceae Thalassia testudinum 6 gene.Thate01g10940, gene.Thate01g12370, gene.Thate01g15600 ...
gene.Thate02g14470, gene.Thate04g12570, gene.Thate04g23010
Plantaginaceae Plantago ovata 2 Pov_00011159, Pov_00035385
Plumbaginaceae Limonium bicolor 7 Lb1G00354, Lb1G04269, Lb1G05332, Lb3G19102, Lb4G26327 ...
Lb6G30763, Lb7G34631
Poaceae Lolium multiflorum 8 gene-QYE76_003245, gene-QYE76_007001, gene-QYE76_013642 ...
gene-QYE76_024406, gene-QYE76_035339, gene-QYE76_040688, gene-QYE76_071047, gene-QYE76_071738
Poaceae Oryza coarctata 7 Oco02G019040, Oco02G023470, Oco12G002390, Oco14G006220 ...
Oco16G004580, Oco23G002320, Oco24G006180
Poaceae Sporobolus alterniflorus 3 Chr03G009110, Chr05G026030, Chr21G013920
Poaceae Zoysia japonica 5 nbis-gene-20349, nbis-gene-26712, nbis-gene-40161 ...
nbis-gene-42276, nbis-gene-52015
Posidoniaceae Posidonia oceanica 44 gene.Posoc01g13060, gene.Posoc01g13470, gene.Posoc01g17170 ...
gene.Posoc01g19610, gene.Posoc01g19890, gene.Posoc01g30520, gene.Posoc02g03670, gene.Posoc02g07870, gene.Posoc02g12200, gene.Posoc02g21640, gene.Posoc02g23720, gene.Posoc02g24020, gene.Posoc02g29000, gene.Posoc03g11580, gene.Posoc03g24400, gene.Posoc03g27140, gene.Posoc04g00740, gene.Posoc04g16630, gene.Posoc04g17200, gene.Posoc04g22090, gene.Posoc04g22120, gene.Posoc04g22140, gene.Posoc04g22170, gene.Posoc04g22200, gene.Posoc04g22210, gene.Posoc04g22240, gene.Posoc04g22320, gene.Posoc04g22340, gene.Posoc04g22350, gene.Posoc05g04040, gene.Posoc05g06180, gene.Posoc05g13900, gene.Posoc05g20610, gene.Posoc06g02030, gene.Posoc06g02880, gene.Posoc06g09130, gene.Posoc06g15880, gene.Posoc06g18800, gene.Posoc06g20520, gene.Posoc06g22270, gene.Posoc07g00420, gene.Posoc08g00970, gene.Posoc08g07810, gene.Posoc09g12000
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-15111
Salicaceae Populus euphratica 2 populus_peu11926, populus_peu14117
Tamaricaceae Reaumuria soongarica 2 STRG.21414_chr09_-, gene_5043
Zosteraceae Zostera marina 11 Zosma01g01490.v3.1, Zosma01g09590.v3.1, Zosma01g11890.v3.1 ...
Zosma01g13250.v3.1, Zosma02g01960.v3.1, Zosma03g16350.v3.1, Zosma04g13440.v3.1, Zosma04g14270.v3.1, Zosma05g00490.v3.1, Zosma06g30640.v3.1, Zosma23g00050.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.