Basic Information
Locus ID:
gene.Posoc06g01030
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 2996491 | 3005080 | - | gene.Posoc06g01030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 87,193.48 Da | 45.22 | 72.67 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 515 | 799 | 3.46975E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 551 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 682 | 717 | 2.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 563 | 593 | 7.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 600 | 637 | 7.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 768 | 799 | 0.067 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 4.0E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 513 | 799 | 5.5E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 647 | 799 | 3.2E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 476 | 646 | 5.6E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 554 | 593 | 8.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 640 | 676 | 70.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 679 | 717 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 761 | 799 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 719 | 758 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 637 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 551 | 6.5E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0052 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 767 | 799 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.174433 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 604 | 646 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 767 | 799 | 12.341042 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 561 | 593 | 10.442869 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 604 | 640 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 561 | 593 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 560 | 9.97376 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 580 | 594 | 6.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 538 | 552 | 6.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 786 | 799 | 6.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 353 | - | - |
| Coils | Coil | Coil | 371 | 395 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_042517296.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Macadamia integrifolia] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PKA5 | Putative WD-repeat protein OS=Zostera marina OX=29655 GN=ZOSMA_215G00410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology