Basic Information
Locus ID:
gene.Posoc06g00970
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 2837598 | 2839439 | + | gene.Posoc06g00970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 22,282.55 Da | 29.44 | 92.38 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_035547254.1 | topless-related protein 4-like [Juglans regia] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LW21 | CTLH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042190 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30080380, pistato.v30275980 |
| Apiaceae | Apium graveolens | 1 | Ag4G00121 |
| Brassicaceae | Brassica nigra | 3 | BniB03g066280.2N, BniB05g041810.2N, BniB05g054270.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10809 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027742 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25036 |
| Posidoniaceae | Posidonia oceanica | 9 | gene.Posoc02g00930, gene.Posoc02g09460, gene.Posoc02g27990 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2213 |