Basic Information
Locus ID:
gene.Posoc05g22720
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 250134455 | 250158390 | - | gene.Posoc05g22720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 64,848.99 Da | 34.15 | 87.92 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 65 | 354 | 2.1E-84 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 47 | 411 | 9.11E-121 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 45 | 418 | 7.5E-138 | IPR037138 |
| PRINTS | PR01271 | Histone deacetylase signature | 100 | 118 | 8.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 270 | 288 | 8.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 193 | 209 | 8.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 253 | 266 | 8.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 152 | 172 | 8.0E-54 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 206 | 221 | 7.7E-23 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 174 | 197 | 7.7E-23 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 292 | 302 | 7.7E-23 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 67 | 84 | 8.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 131 | 148 | 8.0E-54 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_043713416.1 | histone deacetylase 9 isoform X1 [Telopea speciosissima] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T3BQU7 | Histone deacetylase OS=Dendrobium nobile OX=94219 GN=KFK09_008420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology