Basic Information
Locus ID:
gene.Posoc05g21290
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 245116950 | 245118155 | - | gene.Posoc05g21290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 44,953.02 Da | 48.40 | 106.01 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 61 | 2.9E-10 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 79 | 384 | 2.07E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 62 | 6.98E-16 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 74 | 388 | 1.2E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 64 | 6.3E-18 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 58 | 2.9E-16 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 65 | 28.078018 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_008799744.3 | E3 ubiquitin-protein ligase PUB23-like [Phoenix dactylifera] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7I8KGF2 | RING-type E3 ubiquitin transferase OS=Spirodela intermedia OX=51605 GN=SI8410_05007522 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology