Basic Information
Locus ID:
gene.Posoc05g19710
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 241570650 | 241575928 | + | gene.Posoc05g19710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 43,789.55 Da | 42.67 | 88.43 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 227 | 270 | 3.18271E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 11 | 143 | 3.0888E-40 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 227 | 270 | 2.3E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 79 | 140 | 3.4E-11 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 227 | 281 | 5.3E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 79 | 136 | 1.1E-9 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 155 | 9.3E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 276 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 228 | 269 | 6.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 270 | 12.54829 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_009414622.1 | PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1-like [Musa acuminata subsp. malaccensis] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A444DNQ4 | RING-type domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00037504 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology