Basic Information
Locus ID:
gene.Posoc05g19370
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 240883299 | 240896713 | + | gene.Posoc05g19370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 132,631.41 Da | 46.88 | 81.86 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 449 | 651 | 3.47157E-101 | - |
| CDD | cd18794 | SF2_C_RecQ | 652 | 784 | 1.30996E-68 | - |
| Pfam | PF00570 | HRDC domain | 1024 | 1091 | 4.7E-12 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 668 | 774 | 6.8E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 787 | 868 | 2.9E-14 | IPR032284 |
| Pfam | PF09382 | RQC domain | 875 | 990 | 1.6E-18 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 463 | 629 | 1.5E-17 | IPR011545 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1024 | 1095 | 2.11E-11 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 650 | 918 | 1.62E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 425 | 793 | 3.44E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 652 | 870 | 1.1E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 422 | 651 | 2.7E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1015 | 1107 | 1.3E-18 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 873 | 993 | 1.1E-17 | IPR036388 |
| SMART | SM00487 | ultradead3 | 457 | 660 | 2.5E-29 | IPR014001 |
| SMART | SM00956 | RQC_2 | 877 | 988 | 1.5E-18 | IPR018982 |
| SMART | SM00490 | helicmild6 | 694 | 775 | 1.3E-24 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 452 | 928 | 5.1E-163 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1019 | 1101 | 17.318134 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 684 | 725 | 8.929537 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 469 | 644 | 22.373407 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 669 | 815 | 18.550659 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1161 | 1179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1179 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_038989126.1 | ATP-dependent DNA helicase Q-like 4A [Phoenix dactylifera] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1XKM2 | DNA helicase OS=Anthurium amnicola OX=1678845 GN=RECQL4A_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology