Basic Information
Locus ID:
gene.Posoc05g19100
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 239815122 | 239818195 | + | gene.Posoc05g19100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 23,573.69 Da | 35.04 | 89.00 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00043 | CYCLIN | 2 | 69 | 2.4547E-15 | IPR013763 |
| Pfam | PF00134 | Cyclin, N-terminal domain | 3 | 69 | 9.0E-22 | IPR006671 |
| Pfam | PF02309 | AUX/IAA family | 85 | 209 | 1.8E-64 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 117 | 209 | 1.18E-15 | - |
| SUPERFAMILY | SSF47954 | Cyclin-like | 2 | 70 | 1.21E-22 | IPR036915 |
| Gene3D | G3DSA:3.10.20.90 | - | 115 | 209 | 3.4E-33 | - |
| Gene3D | G3DSA:1.10.472.10 | - | 2 | 69 | 3.6E-26 | - |
| SMART | SM00385 | cyclin_7 | 1 | 74 | 6.2E-7 | IPR013763 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 121 | 209 | 22.199577 | IPR000270 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.2 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | XP_039124818.1 | auxin-responsive protein IAA21-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q38826 | Auxin-responsive protein IAA8 OS=Arabidopsis thaliana OX=3702 GN=IAA8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YVV6 | Auxin-responsive protein OS=Anthurium amnicola OX=1678845 GN=IAA27_2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology