Basic Information
Locus ID:
gene.Posoc05g17140
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 230513576 | 230515021 | + | gene.Posoc05g17140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 53,358.96 Da | 57.87 | 65.28 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 166 | 454 | 1.7028E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 454 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 279 | 314 | 5.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 369 | 0.03 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 195 | 255 | 1.3E-8 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 157 | 454 | 4.58E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 104 | 457 | 1.4E-108 | IPR015943 |
| SMART | SM00320 | WD40_4 | 327 | 369 | 0.0026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 230 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 412 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 271 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 314 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 186 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 415 | 454 | 2.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 282 | 323 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 198 | 239 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 282 | 316 | 9.54651 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 198 | 235 | 9.968326 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 422 | 455 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 422 | 455 | 11.778342 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 441 | 455 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 301 | 315 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 301 | 315 | 8.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 441 | 455 | 8.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 173 | 187 | 8.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 141 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_039142445.1 | cell division cycle 20.2, cofactor of APC complex-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843VKV5 | ANAPC4_WD40 domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_024608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology