Basic Information
Locus ID:
gene.Posoc05g12570
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 182014312 | 182015645 | - | gene.Posoc05g12570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 41,734.28 Da | 49.32 | 77.49 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 321 | 360 | 1.2E-7 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 125 | 241 | 2.49E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 314 | 367 | 1.15E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 303 | 365 | 1.2E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 112 | 256 | 2.7E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 318 | 360 | 10.781668 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_042502671.1 | F-box protein At1g67340 [Macadamia integrifolia] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AGJ0 | MYND-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_033540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology