Basic Information
Locus ID:
gene.Posoc05g12560
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
zinc finger (MYND type) family protein F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 181832757 | 181834263 | - | gene.Posoc05g12560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 47,157.84 Da | 50.32 | 74.99 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 365 | 404 | 9.6E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 360 | 410 | 3.49E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 90 | 151 | 9.81E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 168 | 284 | 9.29E-13 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 146 | 299 | 2.9E-19 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 346 | 409 | 7.1E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 362 | 404 | 10.824879 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 102 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_010250720.1 | PREDICTED: F-box protein At1g67340 [Nelumbo nucifera] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7ZRA6 | F-box protein At1g67340 OS=Nelumbo nucifera OX=4432 GN=LOC104592887 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology