Basic Information
Locus ID:
gene.Posoc05g11630
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 172038282 | 172044814 | - | gene.Posoc05g11630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 48,811.16 Da | 61.11 | 84.68 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 240 | 283 | 1.51368E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 18 | 169 | 2.93031E-49 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 240 | 283 | 1.1E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 82 | 149 | 3.0E-10 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 295 | 4.42E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 85 | 169 | 1.2E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 288 | 1.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 32 | 163 | 6.2E-28 | - |
| SMART | SM00184 | ring_2 | 241 | 282 | 1.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 241 | 283 | 12.415513 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_008783392.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843VTW4 | RING-type domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_027295 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology