Basic Information
Locus ID:
gene.Posoc05g11510
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 171040792 | 171049012 | + | gene.Posoc05g11510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 137,165.30 Da | 46.80 | 79.57 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 652 | 784 | 2.57635E-72 | - |
| CDD | cd17920 | DEXHc_RecQ | 449 | 651 | 1.82792E-102 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 670 | 774 | 2.1E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 463 | 630 | 1.9E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 786 | 867 | 1.9E-14 | IPR032284 |
| Pfam | PF09382 | RQC domain | 875 | 988 | 2.3E-21 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 1028 | 1095 | 2.0E-11 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 501 | 795 | 7.93E-57 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 876 | 986 | 4.08E-17 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1021 | 1100 | 5.01E-12 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 425 | 651 | 2.1E-92 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1020 | 1106 | 2.4E-18 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 871 | 997 | 1.7E-19 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 652 | 870 | 9.2E-65 | IPR027417 |
| SMART | SM00341 | hrdc7 | 1023 | 1105 | 4.1E-5 | IPR002121 |
| SMART | SM00487 | ultradead3 | 457 | 660 | 2.4E-32 | IPR014001 |
| SMART | SM00956 | RQC_2 | 877 | 988 | 3.9E-23 | IPR018982 |
| SMART | SM00490 | helicmild6 | 694 | 775 | 1.2E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 453 | 928 | 4.9E-165 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1023 | 1105 | 17.269802 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 684 | 726 | 9.366869 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 469 | 644 | 22.209934 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 669 | 830 | 19.651108 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1125 | - | - |
| Coils | Coil | Coil | 318 | 348 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_019708223.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Elaeis guineensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0PMF0 | DNA helicase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105051907 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology