Basic Information
Locus ID:
gene.Posoc05g06180
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 28407386 | 28418076 | + | gene.Posoc05g06180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 32,561.84 Da | 47.39 | 67.66 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 247 | 285 | 1.2E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 65 | 103 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 110 | 1.41E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 291 | 2.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 236 | 294 | 7.4E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 106 | 4.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 65 | 102 | 1.2E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 247 | 284 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 65 | 103 | 12.69582 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 247 | 285 | 12.69582 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74620.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_035547141.1 | E3 ubiquitin-protein ligase RNF181-like [Juglans regia] | 0 |
| Q6GPV5 | E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S0TCU8 | E3 ubiquitin- ligase RING1-like OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A093473 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology