Basic Information
Locus ID:
gene.Posoc05g03890
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Notchless protein homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 13337300 | 13338675 | + | gene.Posoc05g03890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 23,424.34 Da | 30.17 | 94.25 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 170 | 205 | 8.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 165 | 7.4E-7 | IPR001680 |
| SUPERFAMILY | SSF48452 | TPR-like | 63 | 125 | 3.25E-6 | IPR011990 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 140 | 205 | 1.65E-20 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 33 | 133 | 1.7E-5 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 139 | 205 | 8.3E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 123 | 165 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 207 | 1.5E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 175 | 205 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 175 | 214 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 174 | 11.477578 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52820.1 | WD-40 repeat family protein / notchless protein, putative. | 0 |
| RefSeq | XP_031273739.1 | notchless protein homolog [Pistacia vera] | 0 |
| Q9FLX9 | Notchless protein homolog OS=Arabidopsis thaliana OX=3702 GN=NLE1 PE=2 SV=1 | 0 | |
| TrEMBL | D7T365 | WD_REPEATS_REGION domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044119 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28183 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG002960, gene_TRIDC3BG074590 |
| Poaceae | Triticum aestivum | 1 | TraesCS2B02G245700.1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19012, nbis-gene-28383 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc02g22890, gene.Posoc02g28750, gene.Posoc05g03890 ... |