Basic Information
Locus ID:
gene.Posoc05g02250
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 5818202 | 5823063 | - | gene.Posoc05g02250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 51,320.05 Da | 57.09 | 69.76 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 49 | 134 | 2.88758E-51 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 267 | 330 | 1.60213E-20 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 267 | 333 | 1.4E-13 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 51 | 134 | 3.2E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 264 | 336 | 1.44E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 45 | 144 | 3.92E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 42 | 144 | 1.3E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 250 | 345 | 9.7E-20 | IPR036910 |
| SMART | SM00398 | hmgende2 | 266 | 335 | 4.6E-15 | IPR009071 |
| SMART | SM00501 | bright_3 | 48 | 139 | 2.3E-30 | IPR001606 |
| SMART | SM01014 | ARID_2 | 44 | 134 | 1.7E-27 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 47 | 138 | 25.938868 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 267 | 334 | 14.417817 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_008778105.1 | high mobility group B protein 15-like isoform X2 [Phoenix dactylifera] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BJ30 | high mobility group B protein 15-like isoform X2 OS=Phoenix dactylifera OX=42345 GN=LOC103697941 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology