Basic Information
Locus ID:
gene.Posoc05g01300
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 3227726 | 3234916 | + | gene.Posoc05g01300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 163,205.80 Da | 34.80 | 106.47 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 888 | 1178 | 5.28408E-87 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 586 | 789 | 1.60271E-95 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 274 | 561 | 3.8497E-85 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1201 | 1421 | 2.24051E-123 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 275 | 540 | 9.8E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1220 | 1368 | 7.1E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 905 | 1130 | 1.3E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 611 | 741 | 3.3E-15 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 890 | 1183 | 1.7E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1195 | 1430 | 3.14E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 265 | 565 | 2.49E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 609 | 802 | 1.2E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 608 | 842 | 9.8E-64 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 850 | 1184 | 4.8E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1186 | 1439 | 2.2E-83 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 247 | 572 | 6.3E-45 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1229 | 1420 | 4.1E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 615 | 789 | 8.2E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 579 | 812 | 21.061872 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 276 | 553 | 30.793175 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 890 | 1166 | 33.772667 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1203 | 1437 | 17.57383 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 714 | 728 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_008777748.2 | putative ABC transporter C family member 15 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BIJ4 | putative ABC transporter C family member 15 OS=Phoenix dactylifera OX=42345 GN=LOC103697619 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology