Basic Information
Locus ID:
gene.Posoc05g00360
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
NEP1-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 1171734 | 1172456 | - | gene.Posoc05g00360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 26,661.43 Da | 56.57 | 83.79 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 189 | 231 | 2.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 236 | 5.96E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 237 | 6.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 230 | 6.4E-6 | IPR001841 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 138 | 156 | 8.541853 | IPR003903 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 231 | 13.123657 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_002310515.1 | uncharacterized protein LOC7486098 [Populus trichocarpa] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A830BNY3 | E3 ubiquitin-protein ligase ring1 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_000881600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc05g00320, gene.Posoc05g00360, gene.Posoc05g00400 ... |