Basic Information
Locus ID:
gene.Posoc05g00260
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 692054 | 713221 | - | gene.Posoc05g00260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 102,174.47 Da | 59.60 | 77.20 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 586 | 845 | 5.5E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 557 | 907 | 7.8E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 663 | 708 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 711 | 749 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 801 | 841 | 3.8E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 808 | 844 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 808 | 844 | 9.282875 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 828 | 842 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 561 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 116 | - | - |
| Coils | Coil | Coil | 390 | 413 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_020678014.1 | WD repeat-containing protein LWD1 [Dendrobium catenatum] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T3A6K3 | WD_REPEATS_REGION domain-containing protein OS=Dendrobium nobile OX=94219 GN=KFK09_025692 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology