Basic Information
Locus ID:
gene.Posoc04g23560
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 355059151 | 355060602 | + | gene.Posoc04g23560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 55,692.92 Da | 54.12 | 71.20 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 85 | 115 | 1.1E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 79 | 137 | 6.54E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 70 | 154 | 1.3E-7 | - |
| SMART | SM00256 | fbox_2 | 86 | 126 | 1.5E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 178 | 431 | 1.0E-20 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_023889002.1 | F-box protein At3g07870-like isoform X1 [Quercus suber] | 0 |
| TrEMBL | A0A7N2R961 | F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 12 | gene.Posoc01g26710, gene.Posoc02g34360, gene.Posoc03g11620 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.445 |