Basic Information
Locus ID:
gene.Posoc04g23150
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 354336407 | 354345927 | - | gene.Posoc04g23150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 58,007.77 Da | 58.60 | 77.76 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 340 | 514 | 2.67987E-109 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 337 | 443 | 1.5E-17 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 16 | 102 | 1.4E-12 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 339 | 470 | 2.88E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 321 | 514 | 7.6E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 12 | 122 | 8.7E-32 | - |
| SMART | SM00232 | pad1_6 | 339 | 467 | 3.9E-20 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 340 | 470 | 30.60404 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 257 | - | - |
| Coils | Coil | Coil | 29 | 49 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010264320.1 | PREDICTED: AMSH-like ubiquitin thioesterase 1 [Nelumbo nucifera] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1Z7D3 | AMSH-like ubiquitin thioesterase 1 OS=Anthurium amnicola OX=1678845 GN=AMSH1_3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology