Basic Information
Locus ID:
gene.Posoc04g21580
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
DNA excision repair protein ERCC-6-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 340923151 | 340936281 | + | gene.Posoc04g21580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.86 | 43,516.30 Da | 91.82 | 84.25 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00176 | SNF2 family N-terminal domain | 351 | 388 | 1.1E-5 | IPR000330 |
| Pfam | PF01632 | Ribosomal protein L35 | 313 | 353 | 3.2E-11 | IPR021137 |
| SUPERFAMILY | SSF143034 | L35p-like | 312 | 354 | 3.92E-10 | IPR037229 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 352 | 388 | 8.5E-5 | IPR027417 |
| Gene3D | G3DSA:4.10.410.60 | - | 310 | 367 | 1.5E-10 | IPR037229 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 306 | 323 | 1.6E-9 | IPR001706 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 324 | 338 | 1.6E-9 | IPR001706 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 339 | 357 | 1.6E-9 | IPR001706 |
| Hamap | MF_00514 | 50S ribosomal protein L35 [rpmI]. | 304 | 368 | 12.521542 | IPR001706 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 117 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63950.2 | - | 0 |
| RefSeq | XP_028782966.1 | LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 24-like, partial [Prosopis alba] | 0 |
| Q8W103 | Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana OX=3702 GN=CHR24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D2QWM7 | 50S ribosomal protein L35 OS=Gossypium raimondii OX=29730 GN=B456_004G106500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22213 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_516 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016678, Ah038605 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40531, Sbi_jg50567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018066 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl45154, Sgl45157, Sgl45271, Sgl49942, Sgl50053 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010040, gene:ENSEOMG00000032542 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008400, CQ.Regalona.r1.8BG0009500 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30070700, pistato.v30243060 |
| Apiaceae | Apium graveolens | 1 | Ag8G00825 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G012240 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1154.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G02755 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025600m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g072240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0424 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0521 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12092 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.714 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038412 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14544 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.3111, AH07.114, BH03.3295, CH03.3480 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568640, gene-QOZ80_7BG0599950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0142500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041124 |
| Poaceae | Oryza coarctata | 2 | Oco13G008250, Oco14G008720 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G288700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304161, Pt_Chr0405483 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr19G005870, Chr24G008230, Chr27G011430, Chr28G007550 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G419800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030240, gene_TRIDC2BG033910 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G226200.1, TraesCS2B02G249500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105750_P001, Zm00001eb331320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-929 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6494 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.139, evm.TU.LG26.910 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g17680, gene.Posoc04g21580, gene.Posoc10g03620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.851 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-31722 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5491 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17176 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.64 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012292 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15910 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11079 |
| Salicaceae | Populus euphratica | 2 | populus_peu00964, populus_peu17951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622159 |
| Solanaceae | Solanum chilense | 1 | SOLCI004243600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008662 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5809 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2834 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23010.v3.1 |