Basic Information
Locus ID:
gene.Posoc04g21230
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 339821619 | 339828008 | + | gene.Posoc04g21230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 90,842.52 Da | 62.49 | 58.90 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 356 | 485 | 2.67943E-63 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 368 | 476 | 9.5E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 161 | 331 | 1.7E-48 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 8 | 47 | 7.53E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 209 | 491 | 8.87E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 113 | 347 | 2.1E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 348 | 517 | 2.1E-58 | IPR027417 |
| SMART | SM00456 | ww_5 | 15 | 48 | 8.0E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 156 | 359 | 3.6E-64 | IPR014001 |
| SMART | SM00490 | helicmild6 | 396 | 476 | 1.3E-33 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 14 | 48 | 11.0338 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 168 | 342 | 30.823673 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 137 | 165 | 10.289136 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 371 | 515 | 25.372437 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 20 | 46 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 288 | 296 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 708 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 559 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_018823062.1 | DEAD-box ATP-dependent RNA helicase 14 isoform X1 [Juglans regia] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PG21 | DEAD-box ATP-dependent RNA helicase 14 OS=Zostera marina OX=29655 GN=ZOSMA_252G00120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology