Basic Information
Locus ID:
gene.Posoc04g20710
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
AMSH-like ubiquitin thioesterase 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 336356019 | 336368520 | + | gene.Posoc04g20710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 44,597.82 Da | 49.33 | 81.28 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 218 | 394 | 1.28868E-100 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 216 | 323 | 5.8E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 220 | 349 | 2.48E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 198 | 395 | 2.1E-69 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 9 | 123 | 9.8E-14 | - |
| SMART | SM00232 | pad1_6 | 219 | 347 | 9.0E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 220 | 348 | 26.635483 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_042392449.1 | AMSH-like ubiquitin thioesterase 2 [Zingiber officinale] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3S3NTF9 | AMSH-like protein ubiquitin thioesterase 2 isoform X1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02325700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology