Basic Information
Locus ID:
gene.Posoc04g20140
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 331631791 | 331647015 | - | gene.Posoc04g20140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 49,883.49 Da | 43.86 | 78.17 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 29 | 346 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 43 | 344 | 1.8E-86 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 24 | 400 | 2.21E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 22 | 407 | 9.5E-138 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 12 | 447 | 9.8E-203 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 196 | 211 | 6.7E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 281 | 291 | 6.7E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 242 | 255 | 8.0E-30 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 164 | 187 | 6.7E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 183 | 199 | 8.0E-30 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 259 | 277 | 8.0E-30 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 45 | 62 | 8.0E-30 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 438 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_008791163.2 | histone deacetylase 6 isoform X3 [Phoenix dactylifera] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7I8KXC2 | Histone deacetylase OS=Spirodela intermedia OX=51605 GN=SI8410_09013009 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology