Basic Information
Locus ID:
gene.Posoc04g14060
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 179160030 | 179166246 | + | gene.Posoc04g14060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 26,168.62 Da | 37.34 | 60.52 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 190 | 204 | 3.6E-4 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 174 | 209 | 2.09E-7 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 182 | 212 | 4.7E-6 | - |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 190 | 204 | 10.328513 | IPR001878 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45400.1 | Replication factor-A protein 1-related. | 0 |
| RefSeq | XP_010920581.1 | LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A [Elaeis guineensis] | 0 |
| Q9FHJ6 | Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=3702 GN=RPA1C PE=3 SV=1 | 0 | |
| TrEMBL | A0A1D1XHA3 | Replication protein A subunit OS=Anthurium amnicola OX=1678845 GN=rpa1_15 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000041905 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g09490 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000426 |
| Posidoniaceae | Posidonia oceanica | 15 | gene.Posoc01g27490, gene.Posoc02g07800, gene.Posoc03g08260 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3783 |