halophFGD

Basic Information

Locus ID: gene.Posoc04g12880

Species & Taxonomic ID: Posidonia oceanica & 55489

Genome Assembly: GCA_037176725.1

Description: Small glutamine-rich tetratricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr04	151081777	151086619	-	gene.Posoc04g12880

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.44	33,161.77 Da	30.49	90.24	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	147	182	7.5E-6	IPR013210
Pfam	PF00515	Tetratricopeptide repeat	87	119	1.9E-9	IPR001440
SUPERFAMILY	SSF48452	TPR-like	58	144	1.37E-20	IPR011990
SUPERFAMILY	SSF52058	L domain-like	147	265	6.8E-22	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	46	146	5.0E-21	IPR011990
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	147	267	1.9E-32	IPR032675
SMART	SM00028	tpr_5	86	119	7.7E-8	IPR019734
ProSiteProfiles	PS50005	TPR repeat profile.	86	119	10.0599	IPR019734
MobiDBLite	mobidb-lite	consensus disorder prediction	1	20	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K16365 (small glutamine-rich tetratricopeptide repeat-containing protein alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G08320.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_028757577.1	small glutamine-rich tetratricopeptide repeat-containing protein 2 isoform X2 [Prosopis alba]
Swiss-Prot	C0LGH8	Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana OX=3702 GN=At1g63430 PE=1 SV=1
TrEMBL	A0A0K9PSY1	TPR_REGION domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_182G00430 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Posidoniaceae	Posidonia oceanica	37	gene.Posoc01g06680, gene.Posoc01g06880, gene.Posoc01g26440 ... gene.Posoc01g29480, gene.Posoc01g33290, gene.Posoc02g00010, gene.Posoc02g01630, gene.Posoc02g10450, gene.Posoc02g14150, gene.Posoc02g16790, gene.Posoc02g17140, gene.Posoc02g17150, gene.Posoc03g20350, gene.Posoc03g22380, gene.Posoc03g25910, gene.Posoc04g02750, gene.Posoc04g03060, gene.Posoc04g12880, gene.Posoc04g19770, gene.Posoc05g21170, gene.Posoc06g09400, gene.Posoc06g16150, gene.Posoc06g22130, gene.Posoc07g00920, gene.Posoc07g06820, gene.Posoc07g09250, gene.Posoc08g04280, gene.Posoc08g05080, gene.Posoc08g07430, gene.Posoc08g08080, gene.Posoc08g09780, gene.Posoc08g12200, gene.Posoc09g03610, gene.Posoc09g08200, gene.Posoc10g06970, gene.Posoc10g06980, gene.Posoc10g06990