halophFGD

Basic Information

Locus ID: gene.Posoc04g12400

Species & Taxonomic ID: Posidonia oceanica & 55489

Genome Assembly: GCA_037176725.1

Description: clathrin assembly protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr04	130858931	130863974	+	gene.Posoc04g12400

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.30	17,886.68 Da	40.78	105.10	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07651	ANTH domain	1	88	3.0E-27	IPR011417
SUPERFAMILY	SSF89009	GAT-like domain	3	88	6.28E-28	-
Gene3D	G3DSA:1.20.58.150	ANTH domain	1	98	7.2E-25	IPR014712

Gene Ontology

Biological Process:

GO:0048268 (clathrin coat assembly)

Molecular Function:

Cellular Component:

GO:0030136 (clathrin-coated vesicle)

KEGG Pathway

KO Term:

K20043 (clathrin coat assembly protein AP180)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G01600.1	ENTH/ANTH/VHS superfamily protein.
RefSeq	XP_020105861.1	putative clathrin assembly protein At2g01600 isoform X2 [Ananas comosus]
Swiss-Prot	Q8LBH2	Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana OX=3702 GN=At2g01600 PE=2 SV=2
TrEMBL	A0A6P5GB55	putative clathrin assembly protein At2g01600 isoform X2 OS=Ananas comosus OX=4615 GN=LOC109722285 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Beta vulgaris	1	BVRB_5g105470
Portulacaceae	Portulaca oleracea	2	evm.TU.LG21.853, evm.TU.LG26.828
Posidoniaceae	Posidonia oceanica	12	gene.Posoc01g21050, gene.Posoc01g36390, gene.Posoc04g12350 ... gene.Posoc04g12400, gene.Posoc04g12410, gene.Posoc04g12460, gene.Posoc04g12500, gene.Posoc07g07740, gene.Posoc07g09530, gene.Posoc07g09580, gene.Posoc07g09630, gene.Posoc07g15130
Rhizophoraceae	Kandelia obovata	1	Maker00000459