Basic Information
Locus ID:
gene.Posoc04g10940
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the EF-1-beta EF-1-delta family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 89637938 | 89644846 | - | gene.Posoc04g10940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 31,958.59 Da | 40.15 | 89.10 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14353 | UBA_FAF | 169 | 200 | 4.73302E-12 | - |
| Pfam | PF14555 | UBA-like domain | 165 | 199 | 3.1E-9 | - |
| Pfam | PF00736 | EF-1 guanine nucleotide exchange domain | 136 | 161 | 6.0E-6 | IPR014038 |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 9 | 66 | 3.89E-6 | IPR036282 |
| SUPERFAMILY | SSF54984 | eEF-1beta-like | 132 | 164 | 9.29E-8 | IPR036219 |
| Gene3D | G3DSA:3.30.70.60 | - | 133 | 166 | 8.2E-9 | IPR014717 |
| Gene3D | G3DSA:1.10.8.10 | - | 167 | 202 | 8.0E-6 | - |
| ProSitePatterns | PS00824 | Elongation factor 1 beta/beta'/delta chain signature 1. | 99 | 107 | - | IPR001326 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12110.1 | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6. | 0 |
| RefSeq | XP_017254196.1 | PREDICTED: elongation factor 1-beta 2-like [Daucus carota subsp. sativus] | 0 |
| Q84WM9 | Elongation factor 1-beta 1 OS=Arabidopsis thaliana OX=3702 GN=At5g12110 PE=2 SV=2 | 0 | |
| TrEMBL | A0A164ZCA2 | EF1_GNE domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018945 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH06.579 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g36760.1 |
| Posidoniaceae | Posidonia oceanica | 7 | gene.Posoc02g28380, gene.Posoc03g18980, gene.Posoc04g01100 ... |