Basic Information
Locus ID:
gene.Posoc04g09980
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 73401609 | 73404214 | + | gene.Posoc04g09980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 26,597.22 Da | 49.41 | 90.21 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00043 | CYCLIN | 47 | 99 | 5.08498E-7 | IPR013763 |
| Pfam | PF02309 | AUX/IAA family | 119 | 238 | 2.0E-58 | IPR033389 |
| Pfam | PF02984 | Cyclin, C-terminal domain | 64 | 103 | 3.7E-10 | IPR004367 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 155 | 238 | 2.99E-15 | - |
| SUPERFAMILY | SSF47954 | Cyclin-like | 63 | 104 | 1.13E-10 | IPR036915 |
| Gene3D | G3DSA:3.10.20.90 | - | 149 | 238 | 2.1E-32 | - |
| Gene3D | G3DSA:1.10.472.10 | - | 46 | 128 | 1.7E-11 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 155 | 238 | 23.163689 | IPR000270 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.2 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | XP_039124818.1 | auxin-responsive protein IAA21-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q38826 | Auxin-responsive protein IAA8 OS=Arabidopsis thaliana OX=3702 GN=IAA8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YVV6 | Auxin-responsive protein OS=Anthurium amnicola OX=1678845 GN=IAA27_2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology