HalophFGD

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Basic Information
Locus ID: gene.Posoc04g08340
Species & Taxonomic ID: Posidonia oceanica & 55489
Genome Assembly: GCA_037176725.1
Description: calcium-binding protein
Maps and Mapping Data
Chromosome Start End Strand ID
Chr04 52396712 52398389 - gene.Posoc04g08340
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.98 29,038.00 Da 51.13 89.27 -0.05
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF14111 Domain of unknown function (DUF4283) 159 258 2.7E-12 IPR025558
SUPERFAMILY SSF47473 EF-hand 25 65 1.08E-6 IPR011992
Gene3D G3DSA:1.10.238.10 - 25 67 2.8E-7 -
KEGG Pathway
KO Term:
K13448 (calcium-binding protein CML)
Pathway:
ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G03000.1 EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner 0
RefSeq XP_027084308.1 probable calcium-binding protein CML18 [Coffea arabica] 0
Swiss-Prot Q9M8U1 Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 0
TrEMBL A0A5B6YPF8 Calcium-binding protein CML11 OS=Davidia involucrata OX=16924 GN=Din_002694 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg4982, jg5314, jg7201, jg7495
Aizoaceae Mesembryanthemum crystallinum 2 gene_19737, gene_3444
Amaranthaceae Atriplex hortensis 4 Ah001370, Ah018361, Ah026094, Ah026095
Amaranthaceae Beta vulgaris 3 BVRB_3g049760, BVRB_3g065090, BVRB_6g140870
Amaranthaceae Salicornia bigelovii 6 Sbi_jg12795, Sbi_jg14831, Sbi_jg30921, Sbi_jg53096 ...
Sbi_jg55608, Sbi_jg58355
Amaranthaceae Salicornia europaea 3 Seu_jg25957, Seu_jg26166, Seu_jg8778
Amaranthaceae Suaeda aralocaspica 4 GOSA_00004820, GOSA_00017974, GOSA_00017975, GOSA_00026930
Amaranthaceae Suaeda glauca 9 Sgl01080, Sgl06165, Sgl34081, Sgl34306, Sgl39708, Sgl54904 ...
Sgl54905, Sgl60159, Sgl60160
Amaranthaceae Chenopodium album 9 gene:ENSEOMG00000002563, gene:ENSEOMG00000002741 ...
gene:ENSEOMG00000003487, gene:ENSEOMG00000006445, gene:ENSEOMG00000021033, gene:ENSEOMG00000025609, gene:ENSEOMG00000026220, gene:ENSEOMG00000030675, gene:ENSEOMG00000044328
Amaranthaceae Chenopodium quinoa 5 CQ.Regalona.r1.3AG0007420, CQ.Regalona.r1.3BG0007470 ...
CQ.Regalona.r1.5AG0018680, CQ.Regalona.r1.5BG0019900, CQ.Regalona.r1.6BG0016490
Apiaceae Apium graveolens 4 Ag1G01529, Ag5G02113, Ag6G00819, Ag7G00527
Arecaceae Cocos nucifera 3 COCNU_10G002330, COCNU_14G005220, scaffold020587G000030
Arecaceae Phoenix dactylifera 5 gene-LOC103696753, gene-LOC103714578, gene-LOC103715132 ...
gene-LOC103715953, gene-LOC120110815
Asparagaceae Asparagus officinalis 3 AsparagusV1_01.3626.V1.1, AsparagusV1_04.1194.V1.1 ...
AsparagusV1_10.158.V1.1
Asteraceae Flaveria trinervia 4 Ftri13G23436, Ftri18G17581, Ftri1G20496, FtriNA28860
Brassicaceae Arabidopsis thaliana 4 AT1G18530.1, AT1G32250.1, AT3G03000.1, AT3G25600.1
Brassicaceae Eutrema salsugineum 4 Thhalv10005049m.g.v1.0, Thhalv10008984m.g.v1.0 ...
Thhalv10009363m.g.v1.0, Thhalv10021666m.g.v1.0
Brassicaceae Schrenkiella parvula 4 Sp1g16480.v2.2, Sp1g27930.v2.2, Sp2g14880.v2.2 ...
Sp3g02060.v2.2
Brassicaceae Brassica nigra 8 BniB01g004330.2N, BniB02g066270.2N, BniB03g028070.2N ...
BniB03g035490.2N, BniB04g013780.2N, BniB04g033050.2N, BniB06g066780.2N, BniB07g060910.2N
Casuarinaceae Casuarina equisetifolia 4 Ceq01G0274, Ceq03G2372, Ceq07G0505, Ceq09G1785
Casuarinaceae Casuarina glauca 5 Cgl01G0269, Cgl03G2510, Cgl07G0528, Cgl09G0968, Cgl09G1959
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno09g07860
Dunaliellaceae Dunaliella salina 1 Dusal.1010s00003.v1.0
Hydrocharitaceae Thalassia testudinum 3 gene.Thate02g06900, gene.Thate02g22450, gene.Thate09g04650
Malvaceae Hibiscus hamabo Siebold & Zucc. 2 nbisL1-mrna-11586, nbisL1-mrna-1511
Nitrariaceae Nitraria sibirica 3 evm.TU.LG03.473, evm.TU.LG05.832, evm.TU.LG10.446
Plantaginaceae Plantago ovata 3 Pov_00003032, Pov_00019373, Pov_00027400
Plumbaginaceae Limonium bicolor 1 Lb1G00868
Poaceae Echinochloa crus-galli 6 AH03.3094, BH01.3117, BH02.2353, BH05.1455, CH02.2528 ...
CH05.1644
Poaceae Eleusine coracana subsp. coracana 5 gene-QOZ80_1AG0023620, gene-QOZ80_2AG0118150 ...
gene-QOZ80_2BG0171870, gene-QOZ80_5AG0362090, gene-QOZ80_5BG0410300
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.1HG0053300.1.CDS1 ...
HORVU.MOREX.r3.1HG0080710.1, HORVU.MOREX.r3.1HG0091390.1.CDS1, HORVU.MOREX.r3.3HG0270160.1.CDS1
Poaceae Lolium multiflorum 6 gene-QYE76_013031, gene-QYE76_013069, gene-QYE76_015191 ...
gene-QYE76_038992, gene-QYE76_053655, gene-QYE76_071923
Poaceae Oryza coarctata 5 Oco01G010940, Oco01G014060, Oco02G011420, Oco06G022770 ...
Oco09G017590
Poaceae Oryza sativa 3 LOC_Os01g32120.1, LOC_Os01g41990.1, LOC_Os05g50180.1
Poaceae Paspalum vaginatum 3 gene-BS78_01G274800, gene-BS78_03G187000 ...
gene-BS78_09G246700
Poaceae Puccinellia tenuiflora 4 Pt_Chr0503386, Pt_Chr0503393, Pt_Chr0603245, Pt_Chr0605182
Poaceae Sporobolus alterniflorus 7 Chr02G016040, Chr05G017800, Chr09G006070, Chr0G019460 ...
Chr13G018810, Chr18G012680, Chr22G000570
Poaceae Thinopyrum elongatum 3 Tel1E01G337200, Tel1E01G689000, Tel3E01G373400
Poaceae Triticum dicoccoides 6 gene_TRIDC1AG029380, gene_TRIDC1AG061200 ...
gene_TRIDC1BG034970, gene_TRIDC1BG070160, gene_TRIDC3AG032290, gene_TRIDC3BG036780
Poaceae Triticum aestivum 8 TraesCS1A02G193700.1.cds1, TraesCS1A02G416100.1.cds1 ...
TraesCS1B02G208700.1.cds1, TraesCS1B02G446400.1.cds1, TraesCS1D02G197600.1.cds1, TraesCS3A02G216300.1.cds1, TraesCS3B02G246100.1.cds1, TraesCS3D02G217900.1.cds1
Poaceae Zea mays 4 Zm00001eb161480_P001, Zm00001eb202510_P001 ...
Zm00001eb224870_P001, Zm00001eb296740_P001
Poaceae Zoysia japonica 3 nbis-gene-24772, nbis-gene-29313, nbis-gene-39275
Poaceae Zoysia macrostachya 4 Zma_g10615, Zma_g12991, Zma_g28864, Zma_g8174
Portulacaceae Portulaca oleracea 9 evm.TU.LG01.2708, evm.TU.LG01.661, evm.TU.LG02.119 ...
evm.TU.LG03.103, evm.TU.LG03.40, evm.TU.LG04.111, evm.TU.LG09.1355, evm.TU.LG13.595, evm.TU.LG21.289
Posidoniaceae Posidonia oceanica 6 gene.Posoc02g20870, gene.Posoc03g18930, gene.Posoc04g00790 ...
gene.Posoc04g05020, gene.Posoc04g08340, gene.Posoc06g04060
Rhizophoraceae Bruguiera sexangula 4 evm.TU.Scaffold_15_RagTag.27, evm.TU.Scaffold_16_RagTag.508 ...
evm.TU.Scaffold_2_RagTag.1693, evm.TU.Scaffold_4_RagTag.798
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-22770, nbisL1-mrna-26314, nbisL1-mrna-28562
Rhizophoraceae Ceriops tagal 4 nbisL1-mrna-11173, nbisL1-mrna-12127, nbisL1-mrna-17740 ...
nbisL1-mrna-4675
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-13984, nbisL1-mrna-16549, nbisL1-mrna-17378 ...
nbisL1-mrna-22139
Rhizophoraceae Kandelia candel 3 add.evm.TU.utg000001l.10, add.evm.TU.utg000009l.99 ...
add.evm.TU.utg000022l.114
Rhizophoraceae Kandelia obovata 1 Maker00005079
Rhizophoraceae Rhizophora apiculata 4 nbisL1-mrna-17804, nbisL1-mrna-18055, nbisL1-mrna-21385 ...
nbisL1-mrna-22554
Rhizophoraceae Rhizophora mangle 4 nbisL1-mrna-16735, nbisL1-mrna-19286, nbisL1-mrna-2899 ...
nbisL1-mrna-6390
Salicaceae Populus euphratica 3 populus_peu03223, populus_peu20951, populus_peu34071
Solanaceae Lycium barbarum 5 gene-LOC132615449, gene-LOC132626202, gene-LOC132632251 ...
gene-LOC132634259, gene-LOC132635333
Solanaceae Solanum chilense 4 SOLCI002067500, SOLCI005335600, SOLCI005589000 ...
SOLCI007448000
Solanaceae Solanum pennellii 5 gene-LOC107014001, gene-LOC107014545, gene-LOC107015792 ...
gene-LOC107026854, gene-LOC107027412
Tamaricaceae Reaumuria soongarica 3 STRG.23691_chr05_+, gene_204, gene_3921
Tamaricaceae Tamarix chinensis 3 TC01G4045, TC03G0303, TC06G2820
Zosteraceae Zostera marina 5 Zosma01g13280.v3.1, Zosma03g03610.v3.1, Zosma04g05220.v3.1 ...
Zosma06g00430.v3.1, Zosma06g20220.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.