Basic Information
Locus ID:
gene.Posoc04g06440
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 28381108 | 28414107 | - | gene.Posoc04g06440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 57,019.43 Da | 52.57 | 69.00 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 139 | 191 | 3.12011E-31 | - |
| Pfam | PF00412 | LIM domain | 139 | 193 | 5.5E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 288 | 497 | 1.7E-104 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 165 | 220 | 5.95E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 164 | 3.49E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 133 | 198 | 1.3E-15 | - |
| SMART | SM00726 | uim | 35 | 54 | 63.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 138 | 190 | 8.0E-13 | IPR001781 |
| SMART | SM00726 | uim | 99 | 118 | 0.0076 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 137 | 197 | 12.2563 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 99 | 118 | 10.202594 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 139 | 173 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 97 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_020242041.1 | protein DA1-related 1-like [Asparagus officinalis] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6I9SAF1 | protein DA1-related 1 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105055831 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology