Basic Information
Locus ID:
gene.Posoc04g06360
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 28178390 | 28186378 | - | gene.Posoc04g06360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 60,862.76 Da | 52.82 | 57.48 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 354 | 380 | 1.4E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 320 | 342 | 2.9E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 275 | 299 | 2.1E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 315 | 345 | 3.3E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 270 | 302 | 2.09E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 312 | 347 | 2.0E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 267 | 304 | 4.8E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 348 | 383 | 1.1E-10 | - |
| SMART | SM00547 | zf_4 | 321 | 345 | 1.1E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 277 | 301 | 1.2E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 354 | 378 | 2.2E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 275 | 304 | 9.325869 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 352 | 381 | 9.33716 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 319 | 343 | 9.483959 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 279 | 298 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 323 | 342 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 356 | 375 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 484 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_010916201.1 | zinc finger protein VAR3, chloroplastic [Elaeis guineensis] | 0 |
| TrEMBL | A0A3S3NWR9 | Zinc finger protein VAR3, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02534000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology