Basic Information
Locus ID:
gene.Posoc04g06260
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 27893879 | 27903618 | - | gene.Posoc04g06260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 62,530.86 Da | 48.52 | 102.15 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08442 | ATP-grasp domain | 458 | 535 | 2.8E-11 | IPR013650 |
| SUPERFAMILY | SSF56059 | Glutathione synthetase ATP-binding domain-like | 458 | 535 | 1.01E-9 | - |
| Gene3D | G3DSA:3.30.470.20 | - | 455 | 543 | 1.0E-19 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 336 | - | - |
KEGG Pathway
Pathway:
ko00020 (Citrate cycle (TCA cycle))
map00020 (Citrate cycle (TCA cycle))
ko00640 (Propanoate metabolism)
map00640 (Propanoate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20420.1 | ATP citrate lyase (ACL) family protein. | 0 |
| RefSeq | XP_021888536.1 | succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Carica papaya] | 0 |
| Q84LB6 | Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum OX=4081 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7A7A1 | ATP-grasp domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022133 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19197, jg21232 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7624 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007115 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19032, Sbi_jg37462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5303 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015301 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl03540, Sgl08687, Sgl22378, Sgl27623 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010283, gene:ENSEOMG00000029430 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0015660, CQ.Regalona.r1.4BG0016900 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30163840 |
| Apiaceae | Apium graveolens | 3 | Ag11G03207, Ag3G02453, AgUnG01518 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G014490, COCNU_02G002630, COCNU_03G013570 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701024, gene-LOC103707181, gene-LOC103715950 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1802.V1.1, AsparagusV1_01.432.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G23445, Ftri3G13063 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17145.1, AT1G78420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008156m.g.v1.0, Thhalv10018644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15270.v2.2, Sp5g33520.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g057830.2N, BniB04g031540.2N, BniB05g054310.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0843 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0969 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0017s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g10200, gene.Thate05g06020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9288 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1098 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008437 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23223, Lb7G34673 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.295, BH06.2297, BH06.404, BH07.1118, CH02.229, CH06.401 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0107600, gene-QOZ80_2BG0161220 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.6HG0583520.1, HORVU.MOREX.r3.7HG0653180.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_022008, gene-QYE76_022275, gene-QYE76_036544 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G006590, Oco04G006920, Oco11G002620, Oco11G014150 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g14720.1, LOC_Os06g06120.1, LOC_Os06g44275.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G101600, gene-BS78_10G046900 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0206429, Pt_Chr0401466, Pt_Chr0402155, Pt_Chr0405549 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G017540, Chr04G009500, Chr06G031990, Chr0G013560 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G377700, Tel7E01G223700, Tel7E01G860200 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC6AG027660, gene_TRIDC6BG033820 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS6A02G189300.1, TraesCS6B02G215300.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb204560_P001, Zm00001eb238650_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-34209, nbis-gene-34748, nbis-gene-53135 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12508, Zma_g15404, Zma_g29133, Zma_g31377 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2228, evm.TU.LG14.1403 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc02g24770, gene.Posoc02g26630, gene.Posoc04g06260 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.109, evm.TU.Scaffold_9_RagTag.88 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10525, nbisL1-mrna-22101 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20771, nbisL1-mrna-5369 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10665, nbisL1-mrna-7602 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.64, evm.TU.utg000006l.66 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013276, Maker00017737 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-6689, nbisL1-mrna-9275 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21625, nbisL1-mrna-6922 |
| Salicaceae | Populus euphratica | 2 | populus_peu00715, populus_peu17788 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616686 |
| Solanaceae | Solanum chilense | 1 | SOLCI001285700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026557 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24533_chr08_+, gene_16953 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2487, TC06G0662 |
| Zosteraceae | Zostera marina | 1 | Zosma03g33020.v3.1 |