Basic Information
Locus ID:
gene.Posoc04g06060
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 27190475 | 27193445 | + | gene.Posoc04g06060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 102,940.06 Da | 44.95 | 68.05 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 627 | 656 | 0.0029 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 597 | 624 | 0.0012 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 788 | 907 | 6.3E-36 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 531 | 554 | 0.11 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 641 | 805 | 3.7E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 509 | 626 | 1.7E-8 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 627 | 660 | 8.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 596 | 625 | 9.3E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 624 | 658 | 10.05157 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 593 | 623 | 8.856788 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_029123805.1 | pentatricopeptide repeat-containing protein At2g25580 isoform X2 [Elaeis guineensis] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PGB1 | Pentatricopeptide repeat protein OS=Zostera marina OX=29655 GN=ZOSMA_24G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology