Basic Information
Locus ID:
gene.Posoc04g03080
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 10499711 | 10501364 | - | gene.Posoc04g03080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 45,885.76 Da | 50.47 | 100.27 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 57 | 1.8E-5 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 111 | 318 | 8.89E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 68 | 4.06E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 105 | 359 | 1.1E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 66 | 2.7E-7 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 71 | 9.656436 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00315.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_024445167.2 | F-box/FBD/LRR-repeat protein At1g13570 [Populus trichocarpa] | 0 |
| Q3EAE5 | Putative F-box/FBD/LRR-repeat protein At4g00315 OS=Arabidopsis thaliana OX=3702 GN=At4g00315 PE=4 SV=1 | 0 | |
| TrEMBL | U5FPL6 | FBD domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G107600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_06G006580 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696290, gene-LOC103709871 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3114.V1.1 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.2967, AH02.2968, AH05.224, AH05.225, AH05.226, BH05.254 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5BG0428880, gene-QOZ80_6AG0538570 |
| Poaceae | Oryza coarctata | 2 | Oco02G019100, Oco02G019110 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g51720.1, LOC_Os01g51740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G172600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G022330, Chr06G024100 |
| Poaceae | Zea mays | 1 | Zm00001eb406850_P001 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc04g03080, gene.Posoc04g03090, gene.Posoc04g03100 ... |