Basic Information
Locus ID:
gene.Posoc04g02130
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 6775405 | 6791075 | - | gene.Posoc04g02130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 137,882.67 Da | 50.59 | 74.84 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 282 | 408 | 1.80143E-16 | - |
| CDD | cd12108 | Hr-like | 632 | 791 | 4.40492E-29 | - |
| CDD | cd12108 | Hr-like | 21 | 147 | 2.65812E-31 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1100 | 1143 | 2.10344E-17 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 631 | 737 | 4.7E-6 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 972 | 1047 | 2.3E-16 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 278 | 408 | 3.6E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 27 | 149 | 5.6E-10 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1148 | 1205 | 1.7E-22 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 963 | 1028 | 7.72E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1099 | 1146 | 1.0E-6 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1038 | 1093 | 3.14E-15 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1171 | 1212 | 3.1E-14 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 280 | 426 | 1.4E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1096 | 1144 | 4.5E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 626 | 852 | 4.2E-23 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 17 | 167 | 2.1E-32 | - |
| SMART | SM00184 | ring_2 | 1101 | 1142 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 965 | 1034 | 24.075407 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1101 | 1142 | 11.309038 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1037 | 1100 | 29.902905 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_008797630.2 | zinc finger protein BRUTUS-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PEN6 | Zinc finger protein BRUTUS OS=Zostera marina OX=29655 GN=ZOSMA_269G00170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology