Basic Information
Locus ID:
gene.Posoc04g00820
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 2739530 | 2740354 | + | gene.Posoc04g00820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 31,534.14 Da | 48.16 | 77.52 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 178 | 221 | 5.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 178 | 226 | 2.43E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 227 | 1.7E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 221 | 4.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 222 | 12.1057 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021837244.1 | E3 ubiquitin-protein ligase RZF1-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A6D2J9E7 | RING-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS23480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g00810, gene.Posoc04g00820 |