Basic Information
Locus ID:
gene.Posoc04g00090
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 877417 | 881144 | + | gene.Posoc04g00090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 56,079.92 Da | 52.05 | 104.71 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 40 | 72 | 1.3E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 171 | 288 | 6.54E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 34 | 78 | 3.92E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 40 | 78 | 1.7E-8 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 35 | 86 | 9.523964 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_028111946.1 | putative F-box/LRR-repeat protein At3g18150 isoform X2 [Camellia sinensis] | 0 |
| Q84W80 | F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana OX=3702 GN=At3g03360 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U7Z3P4 | putative F-box/FBD/LRR-repeat protein At1g78760 OS=Nelumbo nucifera OX=4432 GN=LOC104585981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH02.3199, AH02.3200, BH02.3691, CH02.3233, CH02.3276 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0033410, gene-QOZ80_1BG0083520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0289140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055235 |
| Poaceae | Oryza coarctata | 2 | Oco01G019020, Oco02G020860 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g54850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G277400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402024, Pt_Chr0602280 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G009570, Chr05G023920 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G476000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG042940, gene_TRIDC3BG048930 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G291000.1, TraesCS3B02G325700.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13240, nbis-gene-26504 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11158 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g00090 |