Basic Information
Locus ID:
gene.Posoc03g29170
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 433035475 | 433038769 | - | gene.Posoc03g29170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 77,184.10 Da | 30.92 | 77.28 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 23 | 311 | 6.25716E-76 | - |
| CDD | cd10316 | RGL4_M | 353 | 462 | 4.50879E-35 | IPR029413 |
| CDD | cd10317 | RGL4_C | 474 | 663 | 5.47099E-54 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 377 | 459 | 1.1E-22 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 15 | 217 | 4.1E-94 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 472 | 661 | 7.9E-56 | IPR029411 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 351 | 435 | 1.16E-7 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 30 | 312 | 2.29E-7 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 469 | 663 | 3.66E-49 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 24 | 334 | 1.5E-10 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 469 | 663 | 9.0E-20 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 350 | 458 | 6.2E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_020242826.1 | probable rhamnogalacturonate lyase B isoform X1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A1D1ZBA2 | rhamnogalacturonan endolyase OS=Anthurium amnicola OX=1678845 GN=rhiE_23 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology