Basic Information
Locus ID:
gene.Posoc03g28000
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 429723514 | 429724203 | + | gene.Posoc03g28000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 24,916.96 Da | 51.70 | 69.48 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 32 | 76 | 1.62617E-29 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 33 | 74 | 9.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 87 | 7.28E-18 | - |
| SUPERFAMILY | SSF49329 | Cu,Zn superoxide dismutase-like | 145 | 204 | 5.39E-5 | IPR036423 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 91 | 3.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 34 | 74 | 2.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 34 | 75 | 13.197422 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 49 | 58 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010246977.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185 isoform X1 [Nelumbo nucifera] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7A5S3 | RING-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_021438 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology