halophFGD

Basic Information

Locus ID: gene.Posoc03g26900

Species & Taxonomic ID: Posidonia oceanica & 55489

Genome Assembly: GCA_037176725.1

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr03	425068587	425071504	-	gene.Posoc03g26900

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.55	36,516.86 Da	32.63	80.92	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	33	326	4.37166E-93	-
Pfam	PF00400	WD domain, G-beta repeat	288	326	2.2E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	242	283	2.1E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	200	238	2.1E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	118	153	3.5E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	78	109	9.9E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	35	69	1.2E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	157	195	3.4E-10	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	28	326	1.47E-95	IPR036322
Gene3D	G3DSA:2.130.10.10	-	20	330	5.6E-132	IPR015943
SMART	SM00320	WD40_4	30	69	7.1E-12	IPR001680
SMART	SM00320	WD40_4	286	327	0.001	IPR001680
SMART	SM00320	WD40_4	114	153	1.4E-10	IPR001680
SMART	SM00320	WD40_4	198	238	5.1E-5	IPR001680
SMART	SM00320	WD40_4	72	111	3.0E-7	IPR001680
SMART	SM00320	WD40_4	241	283	0.0041	IPR001680
SMART	SM00320	WD40_4	156	195	7.8E-13	IPR001680
PIRSF	PIRSF002394	GNBP_B	6	329	2.1E-79	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	163	204	16.189545	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	121	158	12.26195	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	163	199	12.341042	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	79	114	9.520146	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	206	243	10.07378	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	37	78	17.325764	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	37	71	14.081032	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	79	120	12.279615	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	206	247	13.382416	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	266	292	10.876051	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	121	162	16.055872	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	270	284	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	225	239	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	182	196	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	140	154	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	140	154	6.8E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	56	70	6.8E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	270	284	6.8E-9	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	28	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14963 (COMPASS component SWD3)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_010936247.1	COMPASS-like H3K4 histone methylase component WDR5A [Elaeis guineensis]
Swiss-Prot	Q9M2Z2	COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3702 GN=WDR5A PE=1 SV=1
TrEMBL	A0A0K9PFX1	WD repeat-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_256G00170 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35306, jg39882
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10152, gene_13572
Amaranthaceae	Atriplex hortensis	1	Ah037249
Amaranthaceae	Beta vulgaris	2	BVRB_4g074580, BVRB_5g119310
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17396, Sbi_jg30720, Sbi_jg58546, Sbi_jg62046
Amaranthaceae	Salicornia europaea	2	Seu_jg28415, Seu_jg660
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004978
Amaranthaceae	Suaeda glauca	4	Sgl24276, Sgl29451, Sgl55025, Sgl80526
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009682, gene:ENSEOMG00000029317 ... gene:ENSEOMG00000040311
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0002860, CQ.Regalona.r1.4BG0003010
Anacardiaceae	Pistacia vera	2	pistato.v30056180, pistato.v30204350
Apiaceae	Apium graveolens	2	Ag10G00729, Ag4G01185
Arecaceae	Cocos nucifera	6	COCNU_05G000970, COCNU_06G014350, COCNU_06G019260 ... COCNU_08G011030, COCNU_14G012340, contig68953594G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103704252, gene-LOC103705709, gene-LOC103707622 ... gene-LOC120106995, gene-LOC120111129
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.719.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G26086, Ftri17G18327
Brassicaceae	Arabidopsis thaliana	2	AT3G49660.1, AT4G02730.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10010551m.g.v1.0, Thhalv10022457m.g.v1.0 ... Thhalv10023908m.g.v1.0, Thhalv10028762m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g12420.v2.2, Sp6g02690.v2.2
Brassicaceae	Brassica nigra	3	BniB05g055250.2N, BniB08g045430.2N, BniB08g063320.2N
Casuarinaceae	Casuarina glauca	1	Cgl06G0430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g01100, gene.Cymno06g11640
Dunaliellaceae	Dunaliella salina	2	Dusal.0127s00025.v1.0, Dusal.2856s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09460, gene.Thate09g06630
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1454, evm.TU.LG04.1083, evm.TU.LG10.567
Plantaginaceae	Plantago ovata	3	Pov_00008045, Pov_00024139, Pov_00033976
Plumbaginaceae	Limonium bicolor	3	Lb3G15846, Lb4G23840, Lb4G23844
Poaceae	Echinochloa crus-galli	7	AH01.761, AH02.2714, AH03.3413, BH01.903, BH03.3631 ... CH01.921, CH03.3832
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3BG0263400, gene-QOZ80_7AG0573580 ... gene-QOZ80_7BG0604880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0135250.1, HORVU.MOREX.r3.4HG0338790.1
Poaceae	Lolium multiflorum	2	gene-QYE76_040191, gene-QYE76_040541
Poaceae	Oryza coarctata	3	Oco05G022250, Oco06G023140, Oco14G011270
Poaceae	Oryza sativa	2	LOC_Os03g51550.2, LOC_Os07g38430.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G097800, gene-BS78_02G322200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0304498, Pt_Chr0304575
Poaceae	Sporobolus alterniflorus	7	Chr01G006520, Chr04G027630, Chr07G026550, Chr12G030960 ... Chr19G003920, Chr24G010700, Chr27G013340
Poaceae	Thinopyrum elongatum	2	Tel2E01G377000, Tel4E01G096100
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG025340, gene_TRIDC2BG029800 ... gene_TRIDC4AG040350, gene_TRIDC4BG008810
Poaceae	Triticum aestivum	6	TraesCS2A02G196900.1, TraesCS2B02G224500.1 ... TraesCS2D02G204900.1, TraesCS4A02G258000.1, TraesCS4B02G056500.1, TraesCS4D02G056800.1
Poaceae	Zea mays	5	Zm00001eb055840_P001, Zm00001eb270960_P001 ... Zm00001eb276600_P001, Zm00001eb325000_P001, Zm00001eb325010_P001
Poaceae	Zoysia japonica	4	nbis-gene-14920, nbis-gene-15990, nbis-gene-29410 ... nbis-gene-633
Poaceae	Zoysia macrostachya	3	Zma_g2906, Zma_g585, Zma_g6694
Portulacaceae	Portulaca oleracea	1	evm.TU.LG14.1612
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g21290, gene.Posoc03g05020, gene.Posoc03g26900
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_2_RagTag.305, evm.TU.Scaffold_6_RagTag.1740
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17420, nbisL1-mrna-4886
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11893, nbisL1-mrna-19088
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12028, nbisL1-mrna-9833
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.771, evm.TU.utg000011l.1059
Rhizophoraceae	Kandelia obovata	2	Maker00005699, Maker00008120
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15415, nbisL1-mrna-2488
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3346, nbisL1-mrna-6081
Salicaceae	Populus euphratica	5	populus_peu05212, populus_peu09234, populus_peu16798 ... populus_peu23727, populus_peu32714
Solanaceae	Lycium barbarum	2	gene-LOC132610932, gene-LOC132622208
Solanaceae	Solanum chilense	1	SOLCI004978600
Solanaceae	Solanum pennellii	2	gene-LOC107011469, gene-LOC107031421
Tamaricaceae	Reaumuria soongarica	3	STRG.10373_chr07_-, STRG.17356_chr09_-, gene_4734
Tamaricaceae	Tamarix chinensis	3	TC02G1598, TC02G2983, TC07G2682
Zosteraceae	Zostera marina	2	Zosma05g23000.v3.1, Zosma06g02780.v3.1