Basic Information
Locus ID:
gene.Posoc03g25910
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
vacuolar protein sorting-associated protein 18 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 419417225 | 419431161 | + | gene.Posoc03g25910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 64,651.91 Da | 50.97 | 84.28 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10602 | 26S proteasome subunit RPN7 | 416 | 474 | 1.9E-9 | IPR045135 |
| Pfam | PF00069 | Protein kinase domain | 351 | 461 | 3.2E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 351 | 439 | 8.34E-27 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 154 | 203 | 3.6E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 141 | 217 | 2.4E-6 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 322 | 464 | 1.9E-25 | - |
| SMART | SM00220 | serkin_6 | 252 | 514 | 3.3E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 187 | 580 | 19.396807 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 385 | 397 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| Coils | Coil | Coil | 297 | 331 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12470.1 | zinc ion binding. | 0 |
| RefSeq | XP_028056883.1 | vacuolar sorting protein 18-like isoform X1 [Camellia sinensis] | 0 |
| F4IDS7 | Vacuolar sorting protein 18 OS=Arabidopsis thaliana OX=3702 GN=VPS18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835VK74 | RING-type domain-containing protein OS=Vanilla planifolia OX=51239 GN=HPP92_003721 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 37 | gene.Posoc01g06680, gene.Posoc01g06880, gene.Posoc01g26440 ... |