Basic Information
Locus ID:
gene.Posoc03g22510
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 377748575 | 377749864 | - | gene.Posoc03g22510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 47,970.11 Da | 53.95 | 84.27 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 122 | 165 | 3.05901E-20 | - |
| Pfam | PF13639 | Ring finger domain | 122 | 165 | 3.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 170 | 3.53E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 173 | 3.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 123 | 164 | 3.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 165 | 12.931868 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008801472.2 | E3 ubiquitin-protein ligase ATL42-like [Phoenix dactylifera] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1D1Z5J8 | E3 ubiquitin-protein ligase ATL42 OS=Anthurium amnicola OX=1678845 GN=ATL42_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology