Basic Information
Locus ID:
gene.Posoc03g21930
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 368702245 | 368706526 | + | gene.Posoc03g21930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 63,367.41 Da | 43.71 | 84.96 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 104 | 240 | 9.62665E-28 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 245 | 369 | 2.3E-54 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 117 | 185 | 1.2E-8 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 372 | 428 | 7.6E-10 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 21 | 244 | 7.4E-24 | IPR007012 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 371 | 496 | 3.53E-33 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 245 | 369 | 4.45E-48 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 85 | 238 | 3.03E-39 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 371 | 487 | 4.0E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 94 | 202 | 2.3E-8 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 210 | 369 | 6.3E-61 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 74 | 246 | 1.2E-66 | IPR014492 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 244 | 555 | 4.0E-101 | IPR014492 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 12 | 81 | 2.1E-11 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25850.9 | - | 0 |
| RefSeq | XP_010915376.1 | nuclear poly(A) polymerase 4 isoform X3 [Elaeis guineensis] | 0 |
| O82312 | Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=PAPS2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0MZB3 | polynucleotide adenylyltransferase OS=Cocos nucifera OX=13894 GN=COCNU_03G014690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology