halophFGD

Basic Information

Locus ID: gene.Posoc03g20350

Species & Taxonomic ID: Posidonia oceanica & 55489

Genome Assembly: GCA_037176725.1

Description: DNA repair protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr03	316273727	316277137	+	gene.Posoc03g20350

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.19	26,163.99 Da	42.52	82.13	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00189	Ribosomal protein S3, C-terminal domain	164	224	1.7E-13	IPR001351
SUPERFAMILY	SSF54821	Ribosomal protein S3 C-terminal domain	163	223	1.31E-12	IPR036419
Gene3D	G3DSA:3.30.1140.32	-	150	228	1.7E-29	IPR036419

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

KEGG Pathway

KO Term:

K10803 (DNA-repair protein XRCC1)

Pathway:

ko03410 (Base excision repair) map03410 (Base excision repair)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G35530.1	Ribosomal protein S3 family protein.
RefSeq	XP_052310020.1	40S ribosomal protein S3-1 isoform X2 [Populus trichocarpa]
Swiss-Prot	Q9FJA6	Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1
TrEMBL	A0A0K9NZZ5	DNA repair protein XRCC1-like OS=Zostera marina OX=29655 GN=ZOSMA_46G00560 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Posidoniaceae	Posidonia oceanica	37	gene.Posoc01g06680, gene.Posoc01g06880, gene.Posoc01g26440 ... gene.Posoc01g29480, gene.Posoc01g33290, gene.Posoc02g00010, gene.Posoc02g01630, gene.Posoc02g10450, gene.Posoc02g14150, gene.Posoc02g16790, gene.Posoc02g17140, gene.Posoc02g17150, gene.Posoc03g20350, gene.Posoc03g22380, gene.Posoc03g25910, gene.Posoc04g02750, gene.Posoc04g03060, gene.Posoc04g12880, gene.Posoc04g19770, gene.Posoc05g21170, gene.Posoc06g09400, gene.Posoc06g16150, gene.Posoc06g22130, gene.Posoc07g00920, gene.Posoc07g06820, gene.Posoc07g09250, gene.Posoc08g04280, gene.Posoc08g05080, gene.Posoc08g07430, gene.Posoc08g08080, gene.Posoc08g09780, gene.Posoc08g12200, gene.Posoc09g03610, gene.Posoc09g08200, gene.Posoc10g06970, gene.Posoc10g06980, gene.Posoc10g06990